PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014153-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 619aa    MW: 71026.5 Da    PI: 8.7307
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014153-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.1e-2152126189
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA+++GF++r+ + ++s+ +g +++r+fvCskeg++++              +rtgC a ++v+k ++gkw+++++++eHnHe
  SMil_00014153-RA_Salv  52 EFYSSYATQIGFKIRIGQLYRSRVDGAVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKVDSGKWVLANIKKEHNHE 125
                            6***************************************987..............589***************************9 PP

                   FAR1  89 l 89 
                            +
  SMil_00014153-RA_Salv 126 F 126
                            8 PP

2FAR166.85.4e-21204279190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            kfY +YA ++GF++r+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w+v++l++eHnHe
  SMil_00014153-RA_Salv 204 KFYYTYAASAGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHNHE 277
                            6**************************************9998..............4899**************************9 PP

                   FAR1  89 la 90 
                            + 
  SMil_00014153-RA_Salv 278 FE 279
                            86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-1752126IPR004330FAR1 DNA binding domain
PfamPF031011.7E-16204278IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.522505541IPR007527Zinc finger, SWIM-type
PfamPF044345.8E-8511538IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-7516543IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MNREELGNIM TVRTKPAALV IPKSNGHRED VGQSKMEPHV GLEFDSAEEA QEFYSSYATQ  60
IGFKIRIGQL YRSRVDGAVI SRRFVCSKEG FQTNSRTGCP AFIRVQKVDS GKWVLANIKK  120
EHNHEFEASG ELCPPRIQRK TIPTPRSSSA GGASRTGIRS HEDDSPTGVV DMKRLKKEEM  180
DGMVGPVAEP QKGLEFNSAN EAYKFYYTYA ASAGFRIRIG QLFRSKHDGS ITSRRFVCSK  240
EGHQHPSRVG CGAYMRIQRQ ESGRWVVDRL QKEHNHEFET PTDLSRTVTV ASKGGYREEG  300
SNMLENLDLV ETNGGLSLVK RVSESNISSA WYPLLLEYDY ETCVFQSQTA NEFDSAWDML  360
MEKYNLRENS WFKDMHRTRK SWVPLYLKGT FFAGIPVDGS LKSYFSTLLT SQTPLNEFVV  420
RYEKALEQRR EEERKEDFNS FNLQSILHTK DPIEEQCRRL YTITMFKVFQ KELLECYSYV  480
GMKINVEGAI SRYMVQKCGN GDERKTVAFN ASNLNINCSC KMFEFEGVLC RHALKVLQIM  540
NIRELPSRYI LHRWSKNAKY GILRDADSAG GAQDFKALML WSLREEARNY IEAGAASLER  600
YKLAFEIMQE GRRNLCWQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071525.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ3E7I51e-118FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A103XIS00.0A0A103XIS0_CYNCS; Uncharacterized protein
STRINGSolyc10g084220.1.11e-172(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-119FAR1-related sequence 12